Category Archives: Development

CryptoMiniSat 5.8.0 Released

Development, Research, SAT, , ,

After many months of work, CryptoMiniSat 5.8.0 has been released. In this post I’ll go through the most important changes, and how they helped the solver to be faster and win a few awards, among them 1st place at the SAT incremental track, 3rd place SAT Main track, and 2nd&3d place in the SMT BitVector tracks together with the STP and MinkeyRink solvers.

Gauss-Jordan Elimination

First and foremost, Gauss-Jordan elimination at all levels of the search is now enabled by default. This is thanks to the work detailed in the CAV 2020 paper (video here). The gist of the paper is that we take advantage of the bit-packed matrix and some clever bit field filters to quickly check whether an XOR constraint is propagating, conflicting, or neither. This, and a variety of other improvements lead to about 3-10x speedup for the Gauss-Jordan elimination procedure.

With this speedup, the overhead is quite small, and we enable G-J elimination at all times now. However, there are still limits on the size of the matrix, the number of matrices, and we disable it if it doesn’t seem to improve performance.

As a bit of reflection: our original paper with Nohl and Castelluccia on CryptoMiniSat, featuring Gauss-Jordan elimination at all levels of the search tree was published at SAT 2009. It took about 11 years of work, and in particular the work of Han and Jiang to get to this point, but we finally arrived. The difference is day and night.

Target Phases

This one is really cool, and it’s in CaDiCaL (direct code link here) by Armin Biere, description here (on page 8). If you look at the SAT Race of 2019, you will see that CaDiCaL solved a lot more satisfiable problems than any other solver. If you dig deep enough, you’ll see it’s because of target phases.

Basically, target phases are a variation of phase saving, but instead of saving the phase all the time when backtracking, it only saves it when backtracking from a depth that’s longer than anything seen before. Furthermore, it is doing more than just this: sometimes, it picks only TRUE, and sometimes it picks only FALSE phase. To spice it up, you can keep “local deepest” and “global deepest” if you like, and even pick inverted phases.

It’s pretty self-explanatory if you read this code (basically, just switching between normal, target, inverted, fixed FALSE, fixed TRUE phases) and it helps tremendously. If you look at the graphs of the SAT 2020 competition results (side no. 19 here) you will see a bunch of solvers being way ahead of the competition. That’s target phases right there.

CCAnr Local Search Solver

CryptoMiniSat gained a new local search solver, CCAnr (paper here) and it’s now the default. This is a local search solver by Shaowei Cai who very kindly let me add his solver to CryptoMiniSat and allowed me to add him as an author to the version of CryptoMiniSat that participated in the SAT competition. It’s a local search solver, so it can only solve satisfiable instances, and does so by always working on a full solution candidate that it tries to “massage” into a full solution.

Within CryptoMiniSat, CCAnr takes the starting candidate solution from the phases inside the CDCL solver, and tries to extend it to fit all the clauses. If it finds a satisfying assignment, this is emitted as a result. If it doesn’t, the best candidate solution (the one that satisfies the most clauses) is saved into the CDCL phase and is later used in the CDCL solver. Furthermore, some statistics during the local search phase are saved and then injected into the variable branching heuristics of the CDCL solver, see code here.

Hybrid Variable Branching

Variable branching in CryptoMiniSat has always been a mix of VSIDS (Variable State Independent Decaying Sum, paper here) and Maple (multi-arm bandit based, paper here) heuristics. However, both Maple and VSIDS have a bunch of internal parameters that work best for one, or for another type of SAT problem.

To go around the issue of trying to find a single optimal value for all, CryptoMiniSat now uses a combination of different configurations that is parsed from the command line, such as: “maple1 + maple2 + vsids2 + maple1 + maple2 + vsids1” that allows different configurations for both Maple and VSIDS (v1 and v2 for both) to be configured and used, right from the command line. This configuration system allows for a wider variety of problems to be efficiently solved.

Final Remarks

CryptoMiniSat is now used in many systems. It is the default SAT solver in:

I think the above, especially given their track record of achieving high performance in their respective fields, show that CryptoMiniSat is indeed a well-performing and reliable workhorse. This is thanks to many people, including, but not limited to, Kuldeep Meel, Kian Ming A. Chai, Trevor Hansen, Arijit Shaw, Dan Liew, Andrew V. Jones, Daniel Fremont, Martin Hořeňovský, and others who have all contributed pull requests and valuable feedback. Thanks!

As always, let me know if you have any feedback regarding the solver. You can create a GitHub issue here, and pull request here. I am always interested in new use-cases and I am happy to help integrate it into new systems.

ApproxMCv3, a modern approximate model counter

Development, Research, SAT, , ,

This blogpost and its underlying work has been brewing for many years, and I’m extremely happy to be able to share it with you now. Kuldeep Meel and myself have been working very hard on speeding up approximate model counting for SAT and I think we have made real progress. The research paper, accepted at AAAI-19 is available here. The code is available here (release with static binary here). The main result is that we can solve a lot more problems than before. The speed of solving is orders(!) of magnitude faster than the previous best system:

Background

The idea of approximate model counting, originally by Chakraborty, Meel and Vardi was a huge hit back in 2013, and many papers have followed it, trying to improve its results. All of them were basically tied to CryptoMiniSat, the SAT solver that I maintain, as all of them relied on XOR constraints being added to the regular CNF of a typical SAT problem.

So it made sense to examine what CryptoMiniSat could do to improve the speed of approximate counting. This time interestingly coincided with me giving up on XORs in CryptoMiniSat. The problem was the following. A lot of new in- and preprocessing systems were being invented, mostly by Armin Biere et al, and I quickly realised that I simply couldn’t keep adding them, because they didn’t take into account XOR constraints. They handled CNF just fine, but not XORs. So XORs became a burden, and I removed them in versions 3 and 4 of CryptoMiniSat. But there was need, and Kuldeep made it very clear to me that this is an exciting area. So, they had to come back.

Blast-Inprocess-Recover-Destroy

But how to both have and not have XOR constraints? Re-inventing all the algorithms for XORs was not a viable option. The solution I came up with was a rather trivial one: forget the XORs during inprocessing and recover them after. The CNF would always remain the source of truth. Extracting all the XORs after in- and preprocessing would allow me to run the Gauss-Jordan elimination on the XORs post-recovery. So I can have the cake and eat it too.

The process is conceptually quite easy:

  1. Blast all XORs into clauses that are in the input using intermediate variables. I had all the setup for this, as I was doing Bounded Variable Addition  (also by Biere et al.) so I didn’t have to write code to “hide” these additional variables.
  2. Perform pre- or inprocessing. I actually only do inprocessing nowadays (as it has faster startup time). But preprocessing is just inprocessing at the start ;)
  3. Recover the XORs from the CNF. There were some trivial methods around. They didn’t work as well as one would have hoped, but more on that later
  4. Run the CDCL and Gauss-Jordan code at the same time.
  5. Destroy the XORs and goto 2.

This system allows for everything to be in CNF form, lifting the XORs out when necessary and then forgetting them when it’s convenient. All of these steps are rather trivial, except, as I later found out, recovery.

XOR recovery

Recovering XORs sounds like a trivial task. Let’s say we have the following clauses

 x1 V  x2 V  x3
-x1 V -x2 V  x3
 x1 V -x2 V -x3
-x1 V  x2 V -x3

This is conceptually equivalent to the XOR v1+v2+v3=1. So recovering this is trivial, and has been done before, by Heule in particular, in his PhD thesis. The issue with the above is the following: a stronger system than the above still implies the XOR, but doesn’t look the same. Let me give an example:

 x1 V  x2 V  x3
-x1 V -x2 V  x3
 x1 V -x2 V -x3
-x1 V  x2

This is almost equivalent to the previous set of clauses, but misses a literal from one of the clauses. It still implies the XOR of course. Now what? And what to do when missing literals mean that an entire clause can be missing? The algorithm to recover XORs in such cases is non-trivial. It’s non-trivial not only because of the complexity of how many combinations of missing literals and clauses there can be (it’s exponential) but because one must do this work extremely fast because SAT solvers are sensitive to time.

The algorithm that is in the paper explains all the bit-fiddling and cache-friendly data layout used along with some fun algorithms that I’m sure some people will like. We even managed to use compiler intrinsics to use target-specific assembly instructions for hamming weight calculation. It’s a blast. Take a look.

The results

The results, as shown above, speak for themselves. Problems that took thousands of seconds to solve can now be solved under 20. The reason for such incredible speedup is basically the following. CryptoMiniSatv2 was way too clunky and didn’t have all the fun stuff that CryptoMiniSatv5 has, plus the XOR handling was incorrect, loosing XORs and the like. The published algorithm solves the underlying issue and allows CNF pre- and inprocessing to happen independent of XORs, thus enabling CryptoMiniSatv5 to be used in all its glory. And CryptoMiniSatv5 is fast, as per the this year’s SAT Competition results.

Some closing words

Finally, I want to say thank you to Kuldeep Meel who got me into the National University of Singapore to do the work above and lots of other cool work, that we will hopefully publish soon. I would also like to thank the National Supercomputing Center Singapore  that allowed us to run a ton of benchmarks on their machines, using at least 200 thousand CPU hours to make this paper. This gave us the chance to debug all the weird edge-cases and get this system up to speed where it beats the best exact counters by a wide margin. Finally, thanks to all the great people I had the chance to meet and sometimes work with at NUS, it was a really nice time.

CryptoMiniSat and Parallel SAT Solving

Development, Research, SAT

Since CryptoMiniSat has been getting quite a number of awards with parallel SAT solving, it’s about time I talk about how it does that.There is a ton of literature on parallel SAT solving, and I unfortunately I have barely had time to read any of them. The only research within the parallel SAT solving area that I think has truly weathered the test of time is Plingeling and Treengeling — and they are really interesting to play with. The rest most likely  has some merit too, but I am usually suspect as the results are often –unintentionally — skewed to show how well the new idea performs and in the end they rarely win too many awards, especially not in the long run (this is where Plingeling and Treengeling truly shine). I personally haven’t published what I do in this scene because I have always found it to be a bit too easy and to hence have little merit for publication — but maybe one day I will.

Note: by unintentionally skewed results I mean that as you change parameters, some will inevitably be better than others because of randomness in the SAT solving. This randomness is easy to mistake for positive results. It has happened to everyone, I’m sure, including myself.

Exploiting CryptoMiniSat-specific features

CryptoMiniSat has many different inprocessing systems and many parameters to turn them on/off or to tune them. It has over 60k lines of code which allows this kind of flexibility. This is unlike the Maple*/Glucose* set of solvers, all coming from MiniSat, which basically can do one thing, and one thing only, really well. That seriously helps in the single-threaded setup, but may be an issue when it comes to multi-threading. They have (almost) no inprocessing (there is now vivification in some Maple* solvers), and no complicated preprocessing techniques other than BVE, subsumption and self-subsuming resolution. So, there is little to turn on and off, and there are very few parameters — and the few parameters that are there are all hard-coded into the solver, making them difficult to change.

CryptoMiniSat in parallel mode

To run in parallel mode, CMS takes advantage of its potential heterogeneity by running N different threads, each with radically different parameter settings, and exchanging nothing but unit and binary clauses(!) with the most rudimentary locking system. No exchange of longer clauses, no lockless exchanges, no complicated multi-lock system. One lock for unit clauses, one for binary, even for 24 threads. Is this inefficient? Yes, but it seems good enough, and I haven’t really had too many people asking for parallel performance. To illustrate, here are the parameter sets of the different threads used and here is the sharing and locking system. It’seriously simple, I suggest you take a peek, especially at the parameter sets.

Note that the literature is full of papers explaining what kind of complicated methods can be used to exchange clauses using different heuristics, with pretty graphs, complicated reasoning, etc. I have to admit that it might be useful to do that, however, just running heterogeneous solvers in parallel and exchanging unit&binary clauses performs really well. In fact, it performs so well that I never, ever, in the entire development history of 7 years of CMS, ran even one full experiment to check parallel performance. I usually concentrate on single-threaded performance because checking parallel performance is really expensive.

Checking the performance of a 24 thread setup is about 15x more expensive than the single-threaded variant. I don’t really want to burn the resources for that, as I think it’s good enough as it is. It’s mostly beating solvers with horrendously complicated systems inside them with many research papers backing them up, etc. I think the current performance is proof enough that making things complicated is not the only way to go. Maybe one day I will implement some more sophisticated clause sharing, e.g. sharing clauses that are longer than binary and then I won’t be able to claim that I am doing something quite simple. I will think about it.

Conclusions

I am kinda proud of the parallel performance of CMS as it can showcase the heterogeneity of the system and the different capabilities of the solver. It’s basically doing a form of acrobatics where the solver can behave like a very agile SAT solver with one set of parameters or like a huge monolith with another set of parameters. Since there are many different parameters, there are many different dimensions, and hence there are many orthogonal parameter sets. It’s sometimes interesting to read through the different parameter settings and wonder why one set works so much better than the other on a particular type of benchmark. Maybe there could be some value in investigating that.

CryptoMiniSat 5.6.3 Released

Development, Research, SAT, , , , ,

The latest CryptoMiniSat, version 5.6.3 has been released. This release marks the 12’000th commit to this solver that has weathered more than I originally intended it to weather. It’s been an interesting ride, and I have a lot to thank Kuldeep and NSCC‘s ASPIRE-1 cluster for this release. I have burned over 200k CPU hours to make this release, so it’s a pretty well-performing release (out-performing anything out there, by a wide margin), though I’m working very hard to make sure that neither I nor anyone else will have to burn anything close to that to make a well-performing SAT solver.

The solver has some interesting new algorithms inside, the most interesting of which is Gauss-Jordan elimination using a Simplex-like method, generously contributed by Jie-Hong Roland Jiang and Cheng-Shen Han from the National Taiwan University. This addition should finally settle the issues regarding Gaussian vs Gauss-Jordan elimination in SAT solvers. Note that to use this novel system, you must configure with “cmake -DUSE_GAUSS=ON ..” and then re-compile.

What’s also interesting is what’s not inside, though. I have been reading (maybe too much) Nassim Taleb and he is very much into via negativa. So I tried removing algorithms that have been in the solver for a while and mostly nobody would question if they are useful. In the end I removed the following algorithms from running by default, each removal leading to better solving time:

  • Regular probing. Intree probing is significantly better, so regular probing is not needed. Thanks Matti/Marijn/Armin!
  • Stamping. This was a big surprise, especially because I also had to remove caching, which is my own, crappy (“different”) version of stamping. I knew that it wasn’t always so good to have, but damn. It was a hard call, but if it’s just slowing it down, what can I do. It’s weird.
  • Burst searching. This is when I search for a short period with high randomness all over the search space. I thought it would allow me to explore the search space in places where VSIDS/Maple doesn’t. Why this is slowing the solver down so much may say more about search heuristics/variable bumping/clause bumping than anything.
  • Note that I never had blocked clause elimination. It doesn’t work well for incremental solving. In fact, it doesn’t work at all, though apparently the authors have some new work that allows it to work, super-interesting!

I’m nowadays committed to understanding this damned thing rather than adding another impossible-to-explain magic constant  to make the solving 10% faster. I think there is interesting stuff out there that could be done to make SAT solvers 10x, not 10%, faster.

Testing CryptoMiniSat using GoogleTest

Development, SAT,

Lately, I have been working quite hard on writing module tests for CryptoMinisat using GoogleTest. I’d like to share what I’ve learnt and what surprised me most about this exercise.

An example

First of all, let me show how a typical test looks like:

TEST_F(intree, fail_1)
{
    s->add_clause_outer(str_to_cl(" 1,  2"));
    s->add_clause_outer(str_to_cl("-2,  3"));
    s->add_clause_outer(str_to_cl("-2, -3"));

    inp->intree_probe();
    check_zero_assigned_lits_contains(s, "-2");
}

Here we are checking that intree probing finds that the set of three binary clauses cause a failure and it enqueues “-2” at top level. If one looks at it, it’s a fairly trivial test. It turns out that most are in fact, fairly trivial if the system is set up well. This test’s setup is the following test fixture:

struct intree : public ::testing::Test {
    intree()
    {
        must_inter = false;
        s = new Solver(NULL, &must_inter);
        s->new_vars(30);
        inp = s->intree;
    }
    ~intree()
    {
        delete s;
    }

    Solver* s;
    InTree* inp;
    bool must_inter;
};

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